Agoraphobic science

My first conference of the year, and the last while at NREL, will be the APS March Meeting in Pittsburgh. The APS is perfect for those with short attention spans, a parade of ten minute talks, splattered over an immense number of parallel sessions. Fortunately, my talk is 8 am on the first morning, so I can relax for the rest of the conference. I have begun filtering through the sessions, building my ‘personal schedule’. Rest assured if you didn’t get sick enough of graphene last year, there are a dozen more sessions to wade through in 2009.

A few sessions stand out so far:
1. Predictive Materials Design for Alternative Energy. Five invited presentations centered around the use of hydrogen for renewable energy, from a modeller’s perspective.
2. Semiconductors: Atomic Structure and Lattices. A nice mix of talks in this session, but I am quite biased since I appear on two abstracts (phase changes in Ge2Sb2Te5 and the ordering properties of quaternary chalcogenides).
3. Focus Session: Dilute Magnetic Oxide Semiconductors. Sessions on DMS are always worth attending, if only for the high probability for some good fights. The last fall MRS was no exception: talk A observes ferromagnetism in a given system, talk B fails to, talk C predicts ferromagnetism should exist at room temperature, talk D predicts paramagnetism. In this context, the opening abstract correctly describes the present situation as ‘anarchy’. The current theoretical hot topic, in particular for d0 ferromagnetism (magnetism with no magnetic dopant present, a  close relative of alchemy) is defect localization. This is of course something chemists have been well aware of for a long time (e.g. see the abundance of literature on CeO2, TiO2, even Li-doped MgO). No doubt physicists will preach this as a revelation to all that will listen.
4. Computational Study of Semiconductor Band Structures. Many aspects of semiconductor theory I’ve been acquiring over the last two years are covered here: band offsets, deformation potentials, alloy theory.
5. Frontiers in Electronic Structure Theory. A session I’m obliged to go to. This year does look quite interesting. Many years ago I was at a workshop for the code CRYSTAL where they promised periodic MP2 very shortly, which is only materializing now in CRYSCOR. Here, Kresse et al. appear to have caught up fast. Maybe this will get released in VASP 6, circa 2020.

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Modeller’s toolkit 2009

Six pieces of software I couldn’t live without this year.

1. Zotero. I sung its praises before, and it is still managing my pdf’s (and cif files) to perfection.
2. Cobian. Between daily backups to my USB key, to weekly backups to my external hardrive, Cobian does it all (Imsafe fulfills the same needs, but on OS X).
3. Vesta. I owe the authors of Vesta a lot. Crystal structure visualization and manipulation has never been so fast or beautiful. Make sure to cite their paper if you use it.
4. Inkscape. Vector drawings for those Nature and PRL schematics, without the need to sell your lab coat to afford Adobe Illustrator.
5. Gimp. Not the leather clad man, but the bitmap manipulator for making your images publication quality, without the need to sell your colleague’s lab coat to afford Adobe Photoshop.
6. Chemsketch. When you need to draw some annoyingly obscure organic molecule or make use of orbital templates, the freeware Chemsketch comes in handy.

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Alleluia! The saviour of pdf management

An addiction to Google Reader, with subscriptions to a range of scientific journals, has resulted in many folders filled with uncatalogued papers (pdf files). This is in addition to the many existing project folders each with their own set of references. For finding a particular paper, it’s usually easier to google it and download again, but this of course isn’t an option at home or away when you don’t have access to college journal subscriptions. Papers for Mac isn’t an option because I need to use Windows in work.

Zotero has come to the rescue. It realizes the dream of: (i) downloading citation information and pdf files with one click, (ii) the ability to organize citation data and pdfs with as many categories and sub-categories as you wish, (iii) synching everything between computers, regardless of the operating system. And it manages to do all this by being a Firefox plugin, i.e. there no executable to open or install. So far the results have been wonderful. File synching is achieved via my mobileme account, between a work Windows XP machine and my home OS X machines, so never again do I have to worry about finding a pdf or reference while away from my desk. The only hiccup so far is that it doesn’t recognize the citation data from all journals, so sometimes a little manual input is needed.

To use: (i) Install the Firefox plugin. (ii) To open Zotero just click on the icon in the bottom right of the browser window. (iii) When you’re on an article page (see below) a little notebook icon appears in the address bar (top right), click on it and it downloads straight to your database. You are free to organize it as you wish and Zotero disappears as quickly as it opens. (iv) If you want to synch, just go to the Zotero preferences and link to your WebDAV server (this is only available in the beta version for the moment, but seems to work fine).

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He says, she says...

With funding applications, it’s hard to know what to expect. There’s always a danger that the reviewers aren’t too familiar with the topic at hand, or conversely, that they are experts, with a strong bias against what you propose to do. It takes some skill and effort to make an application accessible and detailed to all potential audiences. What you don’t expect is blatant contradictions in the feedback from the reviewers, e.g. strength: “The proposal is ambitious”; weakness: “The excess of ambition”. The overall result in this instance was positive, but I find it strange that in the funding of young researchers, the hope of broadening one’s research area is taken as a potential risk. For a PhD program, you generally exist in a specific subsection of an already niche scientific discipline, so expanding your interests is both beneficial and necessary. Nonetheless, in this case I was fortunate and the project should be funded... goodbye Denver, hello London! Of course, the time I pick to leave the Department of Energy is when a Nobel Laureate is appointed as the new Secretary of Energy and the Obama transition team make a strong commitment to renewable energy research. Good times are ahead for NREL.

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The art of falling apart

From recent reviewing work, published literature, and miscellaneous correspondences, it is becoming clear to me that like the experimental systems themselves, many authors publishing in the field of dilute magnetic semiconductors are intrinsically unstable at room temperature. Solid-state physicists are a crazy bunch.

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Poincaré 1901: “une accumulation de faits n'est pas plus une science qu'un tas de pierres n'est une maison”

Living at the centre of the democratic convention, it’s a hard task to avoid political polarisation. While it’s understandable that issues such as the right to abortion and off-shore drilling are sensitive issues, the continued push of republicans for creationist teaching in schools is bizarre. Going through the Irish primary school system, Catholicism was a fundamental part of the curriculum. While the incentive of financial rewards associated with each additional sacrament did ease your mind, once you start thinking for yourself, you naturally begin to question the fable vs fact aspects (how big was this ark of Noah? Did Lazarus only get raised from the dead because Mary Magdalene was his cousin, i.e. you need to pull strings to get saved?). In that regard, Jehovah's witnesses are particularly astute, and produce some nice literature as an attempt to reconcile the bible’s teachings with scientific fact, e.g. the six days that the world was created were ‘heavenly days’ which correspond to many millennia, and the resulting evolution was directed towards  the pinnacle of us homo sapiens. The sad thing is that on one side you have religious blind beliefs, while on the other you have the well-informed condescending attitude of people like Richard Dawkins, who can produce some wonderful books, but do little to help rectify the minds of people at large. Obama isn’t the final cure, but he’s definitely as step in the right direction: “religious commitment did not require me to suspend critical thinking”.

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